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ModelSEED Projects

ModelSEED Projects is place to share research and results related to the ModelSEED resource. Sometimes these tools are prototypes for future additions to the ModelSEED or sometimes simply experiments worthy of a home.

✦Systematic Identification and Analysis of Frequent Fusion Events in Metabolic Pathways

Here you will find a work presented in the paper "Systematic Identification and Analysis of Frequent Fusion Events in Metabolic Pathways". (In review)

✦KOMODO - The Known Media Database

KOMODO is a platform for recommending microbial media. The project is led by our collaborator Raphy Zarecki.
Atomic Regulons

Bacillus subtilis​ Regulatory Network

View data presented in paper "Reconstruction of the Regulatory Network for Bacillus Subtilis and Reconciliation with Gene Expression Data".
MINE Database

MINE: Metabolic In Silico Network Expansion Databases

A collection of databases that expand the known metabolome using the BNICE framework with hand-curated reaction rules.

High Quality Central Carbon Core Metabolic Models

Here you will find a work presented in the paper "Modeling Central Metabolism across Microbial Life". This work inspired a very primative version of the new ModelSEED website.